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dual index primer pairs  (New England Biolabs)


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    New England Biolabs dual index primer pairs
    Dual Index Primer Pairs, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 2751 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/index+primer/NEBNext+Multi+Olig+IL+96+Dual+index+prim/bio_rxiv__64898__2026__05__08__723508-214-28-32
    Average 97 stars, based on 2751 article reviews
    dual index primer pairs - by Bioz Stars, 2026-09
    97/100 stars

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    Related Articles

    Amplification:

    Article Title: SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation.
    Article Snippet: Article SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation

    Article Title: Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics.
    Article Snippet: This mix has been PCR amplifyied (98 C, 30 s; 15 cycles: 98 C 10 s; 65 C 75 s; then 65 C 5min; 12 C hold), cleanned at 0.9X ratio with SPRIselect beads (Beckman Coulter B23318) and resuspended in 24mL of ddH2O. .. A second round of PCR amplification has been performed by mixing the 24 mL of adaptors linked cDNA’s complementary-probe strand with 25 mL 2X Q5 high fidelity ot start master mix, 0.5 mL of universal primer and 0.5 mL of index primer (0.1 mM final concentration; NEBNext multiplex oligos for Illumina index primers set 1 E7335). .. This mix has been amplified for 15 cycles (same amplification conditions as before), then cleanned at an 0.8X ratio with SPRISelect Beads (this ratio is used to get rid off fragments <200nt because the DNA-array probes added to the illumina sequencing adaptors and barcodes is 223 nt long without capturing any RNA).

    Construct:

    Article Title: SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation.
    Article Snippet: Article SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation

    Next-Generation Sequencing:

    Article Title: SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation.
    Article Snippet: Article SKP1A bound to Polycomb-silenced genes mediates degradation of PRC2 and preconditions their activation

    Polymerase Chain Reaction:

    Article Title: Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics.
    Article Snippet: This mix has been PCR amplifyied (98 C, 30 s; 15 cycles: 98 C 10 s; 65 C 75 s; then 65 C 5min; 12 C hold), cleanned at 0.9X ratio with SPRIselect beads (Beckman Coulter B23318) and resuspended in 24mL of ddH2O. .. A second round of PCR amplification has been performed by mixing the 24 mL of adaptors linked cDNA’s complementary-probe strand with 25 mL 2X Q5 high fidelity ot start master mix, 0.5 mL of universal primer and 0.5 mL of index primer (0.1 mM final concentration; NEBNext multiplex oligos for Illumina index primers set 1 E7335). .. This mix has been amplified for 15 cycles (same amplification conditions as before), then cleanned at an 0.8X ratio with SPRISelect Beads (this ratio is used to get rid off fragments <200nt because the DNA-array probes added to the illumina sequencing adaptors and barcodes is 223 nt long without capturing any RNA).

    Article Title: SETD1B-mediated broad H3K4me3 controls proper temporal patterns of gene expression critical for spermatid development
    Article Snippet: .. After washing, the beads were used to amplify libraries using 15 cycles of PCR with the universal primer and index primer (NEB, E7335). ..

    Article Title: A Quantitative Sequencing Method for 5-Formylcytosine in RNA
    Article Snippet: .. PCR: To a 200 μL PCR-tube were added 12.5 μL LongAmp Taq 2x Master mix, 0.625 μL SR Primer for Illumina, 0.625 μL index primer (NEBNext Multiplex Small RNA Library Prep Set for Illumina, NEB #7300), 1.25 μL water and 10 μL of cDNA. ..

    Article Title: Enhancer-promoter compatibility is mediated by the promoter-proximal region
    Article Snippet: .. For each technical replicate 8 PCR reactions (each 200ng gDNA) were set up to amplify barcode sequences using S7 Fusion Polymerase kit (#MD-S7-500, Mobidiag) with following PCR conditions: 98°C for 30 s; 30 cycles of 98°C for 10 s, 68°C for 30 s and 72°C for 30 s and using NEBNext® Multiplex Oligos for Illumina®, Index Primer Set 1-4 (NEB). ..

    Article Title: SETD1B-mediated broad H3K4me3 controls proper temporal patterns of gene expression critical for spermatid development.
    Article Snippet: .. After washing, the beads were used to amplify libraries using 15 cycles of PCR with the universal primer and index primer (NEB, E7335). ..

    Article Title: Evaluation of N 6 -methyldeoxyadenosine antibody-based genomic profiling in eukaryotes.
    Article Snippet: For cleanup, 90 μL (1.8×) of AMpure XP beads was added to each sample following the same procedure above butwith elution in 17 μL 10mMTris (pH 7.5) followedby quantificationwith theQubit ssDNAassay kit (Invitrogen Q10212). .. For PCR enrichment, 15 μL of each sample was transferred to a new strip tube and combined with 5 μL of Universal PCR primer, 5 μL of Index primer (both provided in NEBNext Multiplex Oligos for Illumina index primers sets 1 and 2), and 25 μL NEBNext Ultra II Q5 master mix (PCR cycling conditions: 30 sec at 98°C; five to seven cycles for 10 sec at 98°C and then for 75 sec at 65°C; final incubation for 5min at 65°C). ..

    Concentration Assay:

    Article Title: Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics.
    Article Snippet: This mix has been PCR amplifyied (98 C, 30 s; 15 cycles: 98 C 10 s; 65 C 75 s; then 65 C 5min; 12 C hold), cleanned at 0.9X ratio with SPRIselect beads (Beckman Coulter B23318) and resuspended in 24mL of ddH2O. .. A second round of PCR amplification has been performed by mixing the 24 mL of adaptors linked cDNA’s complementary-probe strand with 25 mL 2X Q5 high fidelity ot start master mix, 0.5 mL of universal primer and 0.5 mL of index primer (0.1 mM final concentration; NEBNext multiplex oligos for Illumina index primers set 1 E7335). .. This mix has been amplified for 15 cycles (same amplification conditions as before), then cleanned at an 0.8X ratio with SPRISelect Beads (this ratio is used to get rid off fragments <200nt because the DNA-array probes added to the illumina sequencing adaptors and barcodes is 223 nt long without capturing any RNA).

    Multiplex Assay:

    Article Title: Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics.
    Article Snippet: This mix has been PCR amplifyied (98 C, 30 s; 15 cycles: 98 C 10 s; 65 C 75 s; then 65 C 5min; 12 C hold), cleanned at 0.9X ratio with SPRIselect beads (Beckman Coulter B23318) and resuspended in 24mL of ddH2O. .. A second round of PCR amplification has been performed by mixing the 24 mL of adaptors linked cDNA’s complementary-probe strand with 25 mL 2X Q5 high fidelity ot start master mix, 0.5 mL of universal primer and 0.5 mL of index primer (0.1 mM final concentration; NEBNext multiplex oligos for Illumina index primers set 1 E7335). .. This mix has been amplified for 15 cycles (same amplification conditions as before), then cleanned at an 0.8X ratio with SPRISelect Beads (this ratio is used to get rid off fragments <200nt because the DNA-array probes added to the illumina sequencing adaptors and barcodes is 223 nt long without capturing any RNA).

    Article Title: A Quantitative Sequencing Method for 5-Formylcytosine in RNA
    Article Snippet: .. PCR: To a 200 μL PCR-tube were added 12.5 μL LongAmp Taq 2x Master mix, 0.625 μL SR Primer for Illumina, 0.625 μL index primer (NEBNext Multiplex Small RNA Library Prep Set for Illumina, NEB #7300), 1.25 μL water and 10 μL of cDNA. ..

    Article Title: Enhancer-promoter compatibility is mediated by the promoter-proximal region
    Article Snippet: .. For each technical replicate 8 PCR reactions (each 200ng gDNA) were set up to amplify barcode sequences using S7 Fusion Polymerase kit (#MD-S7-500, Mobidiag) with following PCR conditions: 98°C for 30 s; 30 cycles of 98°C for 10 s, 68°C for 30 s and 72°C for 30 s and using NEBNext® Multiplex Oligos for Illumina®, Index Primer Set 1-4 (NEB). ..

    Article Title: Evaluation of N 6 -methyldeoxyadenosine antibody-based genomic profiling in eukaryotes.
    Article Snippet: For cleanup, 90 μL (1.8×) of AMpure XP beads was added to each sample following the same procedure above butwith elution in 17 μL 10mMTris (pH 7.5) followedby quantificationwith theQubit ssDNAassay kit (Invitrogen Q10212). .. For PCR enrichment, 15 μL of each sample was transferred to a new strip tube and combined with 5 μL of Universal PCR primer, 5 μL of Index primer (both provided in NEBNext Multiplex Oligos for Illumina index primers sets 1 and 2), and 25 μL NEBNext Ultra II Q5 master mix (PCR cycling conditions: 30 sec at 98°C; five to seven cycles for 10 sec at 98°C and then for 75 sec at 65°C; final incubation for 5min at 65°C). ..

    other:

    Article Title: Protocol for the recovery and deep sequencing of short ssDNA pools from transient, fuel-dependent coacervate droplets.
    Article Snippet: adapter ligated DNA 15 NEBNext Ultra II Q5 Master Mix 23 13 25 Index primer (NEB primer set) 5 Universal primer (NEB primer set) 5

    Stripping Membranes:

    Article Title: Evaluation of N 6 -methyldeoxyadenosine antibody-based genomic profiling in eukaryotes.
    Article Snippet: For cleanup, 90 μL (1.8×) of AMpure XP beads was added to each sample following the same procedure above butwith elution in 17 μL 10mMTris (pH 7.5) followedby quantificationwith theQubit ssDNAassay kit (Invitrogen Q10212). .. For PCR enrichment, 15 μL of each sample was transferred to a new strip tube and combined with 5 μL of Universal PCR primer, 5 μL of Index primer (both provided in NEBNext Multiplex Oligos for Illumina index primers sets 1 and 2), and 25 μL NEBNext Ultra II Q5 master mix (PCR cycling conditions: 30 sec at 98°C; five to seven cycles for 10 sec at 98°C and then for 75 sec at 65°C; final incubation for 5min at 65°C). ..

    Incubation:

    Article Title: Evaluation of N 6 -methyldeoxyadenosine antibody-based genomic profiling in eukaryotes.
    Article Snippet: For cleanup, 90 μL (1.8×) of AMpure XP beads was added to each sample following the same procedure above butwith elution in 17 μL 10mMTris (pH 7.5) followedby quantificationwith theQubit ssDNAassay kit (Invitrogen Q10212). .. For PCR enrichment, 15 μL of each sample was transferred to a new strip tube and combined with 5 μL of Universal PCR primer, 5 μL of Index primer (both provided in NEBNext Multiplex Oligos for Illumina index primers sets 1 and 2), and 25 μL NEBNext Ultra II Q5 master mix (PCR cycling conditions: 30 sec at 98°C; five to seven cycles for 10 sec at 98°C and then for 75 sec at 65°C; final incubation for 5min at 65°C). ..



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